PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80B1
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomB01g59630.mRNA1 Alkaloid CYP80B1 low borderline
Bca_GomB02g52650.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB02g70430.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB02g82930.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB02g96880.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB03g56760.mRNA1 Alkaloid CYP80B1 low borderline
Bca_GomB03g88790.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB04g20500.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB06g23490.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB06g23500.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB06g23570.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB08g04200.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomB08g52750.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC02g40780.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC02g52160.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC03g09500.mRNA3 Alkaloid CYP80B1 medium borderline
Bca_GomC03g09730.mRNA2 Alkaloid CYP80B1 medium borderline
Bca_GomC04g14800.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC04g62050.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC07g39590.mRNA1 Alkaloid CYP80B1 low borderline
Bca_GomC07g41850.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC09g23550.mRNA1 Alkaloid CYP80B1 medium borderline
Bca_GomC09g63200.mRNA1 Alkaloid CYP80B1 medium borderline