PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bca_GomC04g21490.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g21500.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g21510.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g34970.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC04g34980.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g40720.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC04g51530.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g51540.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g51570.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g51600.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g51610.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g51630.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC04g51660.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC05g02260.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC05g08600.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC05g29990.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC05g53850.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC05g59030.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC06g08410.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC06g23030.mRNA1 Alkaloid TRI/TRII medium borderline
Bca_GomC06g54940.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC07g07450.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC07g21240.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC07g21980.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC07g36160.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC07g46700.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC07g67530.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC08g05720.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC08g05730.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC08g06550.mRNA1 Alkaloid TRI/TRII medium borderline
Bca_GomC08g42560.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC08g47980.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC08g47990.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC08g48030.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC08g49360.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC08g55990.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC09g05000.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC09g30910.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomC09g32070.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC09g51640.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC09g59390.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC09g59400.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomC09g62000.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB02g15680.mRNA1 Alkaloid TYDC_DDC medium borderline
Bca_GomB03g82710.mRNA1 Alkaloid TYDC_DDC medium borderline
Bca_GomB03g82720.mRNA1 Alkaloid TYDC_DDC medium borderline
Bca_GomB03g82730.mRNA1 Alkaloid TYDC_DDC medium borderline
Bca_GomB03g83330.mRNA1 Alkaloid TYDC_DDC medium borderline
Bca_GomB04g06780.mRNA1 Alkaloid TYDC_DDC medium borderline
Bca_GomB04g06830.mRNA1 Alkaloid TYDC_DDC medium borderline