PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Bca_GomB04g39760.mRNA1 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Bca_GomB04g55860.mRNA1 Flavonoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Bca_GomB04g75460.mRNA1 Flavonoid 4CL medium pass 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB04g75930.mRNA1 Flavonoid 4CL medium pass 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB04g75940.mRNA1 Flavonoid 4CL medium pass 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB05g26690.mRNA1 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Bca_GomB05g26940.mRNA1 Flavonoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Bca_GomB05g27440.mRNA1 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Bca_GomB05g32520.mRNA1 Flavonoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Bca_GomB05g71690.mRNA1 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Bca_GomB05g84920.mRNA1 Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB05g84930.mRNA1 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB05g85240.mRNA1 Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB05g85250.mRNA1 Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB05g85850.mRNA1 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB05g87370.mRNA1 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB05g87390.mRNA1 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB06g00460.mRNA1 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bca_GomB06g09010.mRNA1 Flavonoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Bca_GomB06g12150.mRNA3 Flavonoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB06g12160.mRNA1 Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Bca_GomB06g15100.mRNA1 Flavonoid 4CL medium pass 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB06g15110.mRNA1 Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Bca_GomB06g45510.mRNA1 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Bca_GomB06g63610.mRNA1 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Bca_GomB06g83830.mRNA1 Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bca_GomB07g20480.mRNA1 Flavonoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Bca_GomB07g20560.mRNA1 Flavonoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Bca_GomB07g20670.mRNA1 Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Bca_GomB07g24850.mRNA1 Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bca_GomB07g25050.mRNA1 Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bca_GomB07g46520.mRNA1 Flavonoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Bca_GomB07g46590.mRNA1 Flavonoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Bca_GomB07g47410.mRNA1 Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bca_GomB07g47420.mRNA1 Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bca_GomB07g60330.mRNA1 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Bca_GomB08g00030.mRNA1 Flavonoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB08g00460.mRNA1 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Bca_GomB08g01680.mRNA1 Flavonoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB08g01730.mRNA1 Flavonoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
Bca_GomB08g01760.mRNA1 Flavonoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Bca_GomB08g01780.mRNA1 Flavonoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Bca_GomB08g12880.mRNA1 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bca_GomB08g33140.mRNA1 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bca_GomB08g40780.mRNA1 Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bca_GomB08g58750.mRNA1 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Bca_GomB08g61230.mRNA1 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Bca_GomB08g61240.mRNA1 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Bca_GomB08g61510.mRNA1 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Bca_GomB08g61520.mRNA1 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH