PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomC05g25050.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g33760.mRNA1 Phenylpropanoid 4CL low borderline
Bca_GomC05g43330.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g43340.mRNA1 Phenylpropanoid 4CL low borderline
Bca_GomC05g43780.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g43790.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g44250.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g44280.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g48350.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC05g49170.mRNA1 Phenylpropanoid 4CL low borderline
Bca_GomC06g17800.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC06g35590.mRNA1 Phenylpropanoid 4CL low borderline
Bca_GomC06g43210.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC06g43470.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC06g55450.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC07g02590.mRNA1 Phenylpropanoid 4CL low borderline
Bca_GomC07g03820.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC07g07890.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC07g71210.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC08g25090.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC08g29720.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC08g29800.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC08g29810.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC08g29820.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC08g32090.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC09g16120.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC09g25140.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC09g25150.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC09g28310.mRNA1 Phenylpropanoid 4CL low borderline
Bca_GomC09g53350.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC09g53400.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomC09g53420.mRNA1 Phenylpropanoid 4CL medium pass
Bca_GomB01g01140.mRNA1 Rosmarinic Acid 4CL medium pass
Bca_GomB01g18250.mRNA1 Rosmarinic Acid 4CL medium pass
Bca_GomB01g28180.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g31520.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g43790.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g43970.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g44810.mRNA1 Rosmarinic Acid 4CL medium pass
Bca_GomB01g57910.mRNA2 Rosmarinic Acid 4CL low borderline
Bca_GomB01g57950.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g57970.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g57990.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g58040.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB01g64940.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB02g02300.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB02g104220.mRNA1 Rosmarinic Acid 4CL low borderline
Bca_GomB02g55640.mRNA1 Rosmarinic Acid 4CL medium pass
Bca_GomB02g57650.mRNA1 Rosmarinic Acid 4CL medium pass
Bca_GomB02g84400.mRNA1 Rosmarinic Acid 4CL low borderline