PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g01440.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB01g10000.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB01g10570.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB01g10720.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB01g76690.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB02g106410.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB02g36390.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB02g36400.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB02g60700.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB02g60710.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB02g60740.mRNA2 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB02g60750.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB02g60760.mRNA1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Bca_GomB02g73760.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB02g73770.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB02g73970.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB03g25370.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB03g30310.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB03g31060.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB03g44550.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB03g44560.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB03g44570.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB03g44610.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB04g10110.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB04g26710.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB04g26720.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB04g26730.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB04g26740.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB04g26750.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB04g32240.mRNA1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Bca_GomB04g32260.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB04g32280.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB04g45190.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB04g50790.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB04g50800.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB04g56050.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB04g56120.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB04g56130.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB05g30760.mRNA1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Bca_GomB05g30770.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB05g30790.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB05g30800.mRNA1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Bca_GomB05g30820.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB05g30830.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB06g23350.mRNA1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
Bca_GomB06g23360.mRNA2 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB06g28180.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB06g70460.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB06g71600.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Bca_GomB06g72190.mRNA1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH