PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
Bca_GomB01g00770.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g00780.mRNA1 Phenylpropanoid C3'H/CYP98A high pass
Bca_GomB01g02180.mRNA1 Phenylpropanoid C3'H/CYP98A medium pass
Bca_GomB01g02250.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g03970.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g03990.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g04000.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g07370.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g07380.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g07490.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g07500.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g10940.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g10950.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g11020.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g15030.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g15040.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g15920.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g22510.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g23080.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g23470.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g25150.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g25190.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g29780.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g30050.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g30690.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g41810.mRNA1 Phenylpropanoid C3'H/CYP98A medium pass
Bca_GomB01g43080.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48040.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48050.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48060.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48070.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48110.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48120.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g48130.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g49430.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g49580.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g53780.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g61760.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g67380.mRNA1 Phenylpropanoid C3'H/CYP98A high pass
Bca_GomB01g67390.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g67410.mRNA1 Phenylpropanoid C3'H/CYP98A high pass
Bca_GomB01g70580.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline
Bca_GomB01g70810.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g71690.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g72530.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g76560.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g77410.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB01g77440.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB02g01110.mRNA1 Phenylpropanoid C3'H/CYP98A low borderline
Bca_GomB02g02020.mRNA1 Phenylpropanoid C3'H/CYP98A medium borderline