PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
Bca_GomB01g03940.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB01g12060.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB01g18820.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB01g18850.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB01g42860.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB01g71030.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g102300.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB02g17130.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g17230.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB02g39100.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB02g56250.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB02g59960.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g60030.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g60260.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g67280.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g67290.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB02g67340.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g76260.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB02g89630.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB02g95570.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB02g98900.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB03g45640.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB03g63790.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB03g64370.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB03g65110.mRNA2 Phenylpropanoid CAD low borderline
Bca_GomB03g70010.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB03g84260.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB04g02240.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB04g20790.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB04g32620.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB04g47300.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g47310.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g47320.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g47330.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g47340.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g67700.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g67710.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB04g75710.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB05g03980.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB05g11420.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB05g11430.mRNA1 Phenylpropanoid CAD medium pass
Bca_GomB05g33950.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB05g34370.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB05g78020.mRNA1 Phenylpropanoid CAD medium borderline
Bca_GomB06g27330.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB06g82840.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB06g82900.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB06g82980.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB07g12270.mRNA1 Phenylpropanoid CAD low borderline
Bca_GomB07g12320.mRNA1 Phenylpropanoid CAD low borderline