PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Bca_GomB07g12340.mRNA1 Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Bca_GomB07g27560.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB07g28050.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB07g64590.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB07g76170.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB08g41280.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB08g44960.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB08g48330.mRNA1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB08g51170.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB08g59280.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC01g01660.mRNA1 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Bca_GomC01g01670.mRNA1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC01g01810.mRNA1 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Bca_GomC01g03170.mRNA1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC01g03180.mRNA1 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Bca_GomC01g07960.mRNA1 Phenylpropanoid CAD medium pass CAD__00008__sp_O49482_CADH5_ARATH
Bca_GomC01g29630.mRNA1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC01g38840.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC02g00850.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC02g01010.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC02g20970.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC02g23710.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC02g60290.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC03g36390.mRNA1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC03g38410.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC03g40960.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC03g81600.mRNA1 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Bca_GomC03g81610.mRNA1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC03g81620.mRNA1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC04g27300.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC04g33470.mRNA1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomC05g10680.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC05g10750.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC05g10770.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC05g10780.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC05g27300.mRNA1 Phenylpropanoid CAD low borderline CAD__00010__sp_P48523_CADH4_ARATH
Bca_GomC05g35340.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC05g36350.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC05g39480.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC05g46110.mRNA1 Phenylpropanoid CAD medium pass CAD__00010__sp_P48523_CADH4_ARATH
Bca_GomC06g01530.mRNA1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomC06g09490.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomC06g13650.mRNA1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomC06g35780.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC06g50400.mRNA1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomC06g55380.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomC06g57410.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC07g05500.mRNA1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomC07g35370.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomC07g51590.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM