PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g05140.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB01g18820.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB01g18850.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB01g21950.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB01g22520.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB01g23660.mRNA1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB01g37190.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomB01g41790.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB01g63880.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB01g71700.mRNA1 Steroid CAS medium pass CAS__00006__sp_Q2XPU6_CAS1_RICCO
Bca_GomB01g71720.mRNA1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Bca_GomB02g103730.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB02g10930.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomB02g14360.mRNA1 Steroid CAS low borderline CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomB02g14430.mRNA1 Steroid CAS low borderline CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomB02g18590.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB02g67280.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB02g67290.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB02g67340.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB02g76260.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB02g80320.mRNA1 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Bca_GomB02g84710.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB03g30600.mRNA2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB03g31200.mRNA1 Steroid CAS medium borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB03g31450.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB03g33620.mRNA1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Bca_GomB03g93320.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB03g98210.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB04g01470.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB04g01720.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB04g01750.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB04g01790.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB04g16250.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB04g20790.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB04g26590.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB04g74540.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB05g31090.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB05g31670.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB05g33950.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB05g34370.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB05g35950.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB06g55160.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB06g59370.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB06g64100.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomB06g64190.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomB06g64200.mRNA1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
Bca_GomB06g64240.mRNA1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Bca_GomB06g64250.mRNA1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
Bca_GomB06g64550.mRNA1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
Bca_GomB06g76030.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL