PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Bca_GomB06g76970.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB06g82840.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB06g82900.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB06g82980.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB06g83480.mRNA2 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Bca_GomB06g83490.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomB07g07810.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB07g11910.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB07g40130.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB07g40140.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB07g46020.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB07g61150.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomB08g44960.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB08g48330.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB08g51170.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB08g59280.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomB08g65960.mRNA2 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomC01g00280.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC01g29610.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC01g29630.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC01g34450.mRNA1 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Bca_GomC02g20970.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC02g54700.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC03g02580.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC03g06440.mRNA1 Steroid CAS low borderline CAS__00002__sp_E2IUB0_CASS_KALDA
Bca_GomC03g36390.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC03g38410.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC03g40960.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC03g42840.mRNA1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC03g59310.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomC03g59400.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomC03g62360.mRNA1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Bca_GomC03g65320.mRNA1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC03g84630.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC04g05460.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC04g26800.mRNA2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC04g31740.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC04g39920.mRNA1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Bca_GomC04g63470.mRNA1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC04g63490.mRNA1 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC05g19120.mRNA1 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
Bca_GomC05g19130.mRNA1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Bca_GomC05g24510.mRNA1 Steroid CAS medium pass CAS__00002__sp_E2IUB0_CASS_KALDA
Bca_GomC05g45140.mRNA1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Bca_GomC05g45150.mRNA1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Bca_GomC05g58900.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC06g11800.mRNA1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Bca_GomC06g34830.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomC06g56920.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Bca_GomC06g56930.mRNA1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH