PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
Bca_GomB05g63120.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB05g71430.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB05g79550.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB05g85960.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB06g02460.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB06g02570.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB06g11330.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB06g22980.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB06g24360.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB06g57970.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB06g63510.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB06g74630.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB06g75360.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB07g23300.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB07g23310.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB07g48960.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB07g72060.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB07g74930.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB07g77150.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB08g01930.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB08g17760.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g18150.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g40550.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB08g40640.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomB08g46350.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g77110.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g77130.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g77190.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g77210.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomB08g85740.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g01870.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g02060.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g04190.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g06940.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g22130.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g22360.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g31880.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g31900.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g44410.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g44420.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC01g58150.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomC02g09910.mRNA1 Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomC02g15740.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC02g33160.mRNA1 Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomC02g33230.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomC02g34010.mRNA1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Bca_GomC02g42070.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC02g44700.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC02g62800.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Bca_GomC02g62810.mRNA1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL