PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomC08g24750.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g24780.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g35180.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g48760.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g49270.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g50210.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g58350.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g58360.mRNA2 Steroid DWF4/CYP90B1 low borderline
Bca_GomC08g58600.mRNA1 Steroid DWF4/CYP90B1 medium borderline
Bca_GomC09g06020.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g06030.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g06070.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g07110.mRNA1 Steroid DWF4/CYP90B1 medium borderline
Bca_GomC09g10040.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g24930.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g35950.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g50530.mRNA1 Steroid DWF4/CYP90B1 medium borderline
Bca_GomC09g50720.mRNA1 Steroid DWF4/CYP90B1 medium borderline
Bca_GomC09g57440.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g60940.mRNA1 Steroid DWF4/CYP90B1 medium borderline
Bca_GomC09g63050.mRNA1 Steroid DWF4/CYP90B1 low borderline
Bca_GomC09g63100.mRNA1 Steroid DWF4/CYP90B1 low borderline