PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status Best Target
Bca_GomC03g63190.mRNA1 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Bca_GomC03g77400.mRNA1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Bca_GomC04g08320.mRNA1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC04g08670.mRNA1 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Bca_GomC04g60530.mRNA1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Bca_GomC04g60760.mRNA1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC05g04500.mRNA1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Bca_GomC05g29970.mRNA1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC06g01590.mRNA1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC06g24310.mRNA1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC07g05580.mRNA1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC07g17250.mRNA1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC08g31810.mRNA1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Bca_GomC08g49580.mRNA1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Bca_GomC09g57850.mRNA1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC