PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Bca_GomB03g09350.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g09360.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g09370.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g09380.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g11100.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g11500.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g13170.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g13640.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g15390.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g17060.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g20610.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g20620.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g21350.mRNA2 Flavonoid IFS low borderline
Bca_GomB03g29280.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g36560.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g36570.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g49760.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g52220.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g53080.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g59380.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g59470.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g65970.mRNA1 Flavonoid IFS low borderline
Bca_GomB03g88030.mRNA1 Flavonoid IFS medium borderline
Bca_GomB03g88040.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g00510.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g02250.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g07780.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g09710.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g10340.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g10350.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g12160.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g13610.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g14630.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g14660.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g15370.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g17910.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g18380.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g18420.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g20520.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g20540.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g20560.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g20650.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g20800.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g25840.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g26000.mRNA1 Flavonoid IFS low borderline
Bca_GomB04g26610.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g26630.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g27770.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g27840.mRNA1 Flavonoid IFS medium borderline
Bca_GomB04g27850.mRNA2 Flavonoid IFS low borderline