PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

/

Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
Reset
Gene Pathway Family Confidence Status
Bca_GomB01g07370.mRNA1 Alkaloid IO medium borderline
Bca_GomB01g07500.mRNA1 Alkaloid IO medium borderline
Bca_GomB01g23470.mRNA1 Alkaloid IO medium pass
Bca_GomB01g53780.mRNA1 Alkaloid IO medium borderline
Bca_GomB01g67380.mRNA1 Alkaloid IO medium borderline
Bca_GomB01g67390.mRNA1 Alkaloid IO medium borderline
Bca_GomB01g67410.mRNA1 Alkaloid IO medium borderline
Bca_GomB01g72530.mRNA1 Alkaloid IO medium pass
Bca_GomB02g57420.mRNA1 Alkaloid IO low borderline
Bca_GomB02g85890.mRNA1 Alkaloid IO medium borderline
Bca_GomB02g86260.mRNA1 Alkaloid IO medium borderline
Bca_GomB02g97910.mRNA1 Alkaloid IO medium borderline
Bca_GomB02g98390.mRNA1 Alkaloid IO medium pass
Bca_GomB02g99570.mRNA1 Alkaloid IO medium borderline
Bca_GomB03g21070.mRNA1 Alkaloid IO medium pass
Bca_GomB03g29280.mRNA1 Alkaloid IO medium borderline
Bca_GomB03g49990.mRNA1 Alkaloid IO medium borderline
Bca_GomB03g50050.mRNA1 Alkaloid IO high pass
Bca_GomB04g02250.mRNA1 Alkaloid IO medium borderline
Bca_GomB04g26630.mRNA1 Alkaloid IO medium borderline
Bca_GomB04g27680.mRNA1 Alkaloid IO low borderline
Bca_GomB04g28360.mRNA1 Alkaloid IO low borderline
Bca_GomB04g28490.mRNA1 Alkaloid IO low borderline
Bca_GomB05g08940.mRNA1 Alkaloid IO low borderline
Bca_GomB05g09930.mRNA1 Alkaloid IO medium pass
Bca_GomB05g10040.mRNA1 Alkaloid IO medium pass
Bca_GomB05g10220.mRNA1 Alkaloid IO medium pass
Bca_GomB05g11920.mRNA1 Alkaloid IO medium borderline
Bca_GomB05g11950.mRNA1 Alkaloid IO medium borderline
Bca_GomB05g12220.mRNA2 Alkaloid IO medium borderline
Bca_GomB05g29130.mRNA1 Alkaloid IO medium borderline
Bca_GomB05g38250.mRNA1 Alkaloid IO low borderline
Bca_GomB05g55440.mRNA3 Alkaloid IO medium pass
Bca_GomB05g64320.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g00280.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g00300.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g00990.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g12660.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g13250.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g13800.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g31110.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g31120.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g34710.mRNA1 Alkaloid IO low borderline
Bca_GomB06g54920.mRNA1 Alkaloid IO medium borderline
Bca_GomB06g69200.mRNA1 Alkaloid IO low borderline
Bca_GomB06g73990.mRNA1 Alkaloid IO medium borderline
Bca_GomB07g05440.mRNA1 Alkaloid IO medium borderline
Bca_GomB07g17790.mRNA1 Alkaloid IO medium borderline
Bca_GomB07g17880.mRNA1 Alkaloid IO medium borderline
Bca_GomB07g48550.mRNA1 Alkaloid IO medium borderline