PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Bca_GomB08g25510.mRNA1 Alkaloid IO medium borderline
Bca_GomB08g44660.mRNA1 Alkaloid IO medium borderline
Bca_GomB08g65870.mRNA1 Alkaloid IO medium borderline
Bca_GomB08g80310.mRNA1 Alkaloid IO low borderline
Bca_GomB08g91310.mRNA1 Alkaloid IO medium borderline
Bca_GomB08g91370.mRNA1 Alkaloid IO medium borderline
Bca_GomC01g02690.mRNA1 Alkaloid IO medium pass
Bca_GomC01g02910.mRNA1 Alkaloid IO medium pass
Bca_GomC01g03690.mRNA1 Alkaloid IO medium borderline
Bca_GomC01g04070.mRNA1 Alkaloid IO medium borderline
Bca_GomC01g20790.mRNA1 Alkaloid IO medium borderline
Bca_GomC01g35550.mRNA1 Alkaloid IO medium borderline
Bca_GomC02g03780.mRNA1 Alkaloid IO medium borderline
Bca_GomC02g04480.mRNA1 Alkaloid IO medium borderline
Bca_GomC02g39840.mRNA1 Alkaloid IO medium borderline
Bca_GomC02g41690.mRNA1 Alkaloid IO low borderline
Bca_GomC02g47580.mRNA1 Alkaloid IO low borderline
Bca_GomC03g36530.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g38290.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g41530.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g44950.mRNA1 Alkaloid IO low borderline
Bca_GomC03g46810.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g54410.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g59830.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g59840.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g81420.mRNA1 Alkaloid IO medium pass
Bca_GomC03g82010.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g82020.mRNA1 Alkaloid IO medium borderline
Bca_GomC03g90110.mRNA1 Alkaloid IO medium borderline
Bca_GomC04g02120.mRNA1 Alkaloid IO medium borderline
Bca_GomC04g37730.mRNA1 Alkaloid IO medium borderline
Bca_GomC04g65670.mRNA1 Alkaloid IO medium borderline
Bca_GomC05g02890.mRNA1 Alkaloid IO medium borderline
Bca_GomC05g18860.mRNA1 Alkaloid IO medium borderline
Bca_GomC05g56270.mRNA1 Alkaloid IO medium borderline
Bca_GomC06g21760.mRNA1 Alkaloid IO medium borderline
Bca_GomC07g41140.mRNA1 Alkaloid IO medium borderline
Bca_GomC07g42790.mRNA1 Alkaloid IO medium pass
Bca_GomC07g52960.mRNA1 Alkaloid IO medium borderline
Bca_GomC07g58780.mRNA1 Alkaloid IO medium borderline
Bca_GomC07g63430.mRNA1 Alkaloid IO medium pass
Bca_GomC07g71700.mRNA1 Alkaloid IO medium borderline
Bca_GomC08g43630.mRNA1 Alkaloid IO medium borderline
Bca_GomC08g45580.mRNA1 Alkaloid IO medium borderline
Bca_GomC08g49270.mRNA1 Alkaloid IO medium borderline
Bca_GomC08g65040.mRNA1 Alkaloid IO medium borderline
Bca_GomC09g19590.mRNA1 Alkaloid IO medium borderline
Bca_GomC09g24930.mRNA1 Alkaloid IO low borderline
Bca_GomC09g60380.mRNA1 Alkaloid IO medium pass