PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Bca_GomB06g19960.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB06g20270.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB06g31580.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB06g34750.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB07g00340.mRNA3 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB07g10900.mRNA1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomB07g32180.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB07g32200.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB08g05660.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB08g05670.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomB08g17940.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomB08g17970.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC02g02370.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC02g02420.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC02g02730.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC02g03830.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC02g13820.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC02g13830.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC02g15920.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC02g30240.mRNA1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC02g53400.mRNA1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Bca_GomC02g59100.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC03g08130.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC03g08250.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC03g08260.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC03g08270.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC03g19380.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC03g28930.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC03g29160.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC04g08200.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC04g10680.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC04g20350.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC04g51350.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC04g52200.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC04g59140.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC04g59210.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC04g60930.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC04g65580.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC05g01850.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC05g01940.mRNA1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC05g55580.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC07g26330.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC07g63310.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC08g27760.mRNA1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC09g13020.mRNA1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
Bca_GomC09g32880.mRNA1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
Bca_GomC09g39430.mRNA1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC09g39440.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC09g39450.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Bca_GomC09g39460.mRNA1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH