PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Bca_GomC02g22530.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC03g09380.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC03g22430.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC03g47960.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC03g82710.mRNA2 Alkaloid LAMT medium borderline
Bca_GomC04g01380.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC04g01390.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g01460.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g17220.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g17810.mRNA1 Alkaloid LAMT low borderline
Bca_GomC05g17860.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g55400.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g55410.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g55420.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC05g60450.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC06g22180.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC06g38820.mRNA1 Alkaloid LAMT low borderline
Bca_GomC06g43820.mRNA2 Alkaloid LAMT medium borderline
Bca_GomC06g44070.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC06g44180.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC06g45540.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC07g09180.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC07g25470.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC07g64380.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC07g69010.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC08g19070.mRNA1 Alkaloid LAMT low borderline
Bca_GomC08g20340.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC09g08840.mRNA1 Alkaloid LAMT medium borderline
Bca_GomC09g37590.mRNA1 Alkaloid LAMT medium borderline