PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Bca_GomB02g81900.mRNA1 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB02g91450.mRNA1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Bca_GomB02g93000.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB02g93010.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB02g93490.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB03g00790.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB03g10670.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB03g10820.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB03g13650.mRNA1 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Bca_GomB03g15920.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB03g16050.mRNA1 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB03g19980.mRNA1 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Bca_GomB03g34040.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomB03g46950.mRNA1 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bca_GomB03g48060.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB03g50610.mRNA1 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Bca_GomB03g51400.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB03g51630.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB03g57770.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB03g64110.mRNA2 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB03g65810.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB03g68300.mRNA1 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Bca_GomB03g68720.mRNA1 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Bca_GomB03g69460.mRNA1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Bca_GomB03g69880.mRNA1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Bca_GomB03g70160.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB03g72320.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB03g79830.mRNA1 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
Bca_GomB03g81960.mRNA1 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB03g86340.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB03g86920.mRNA1 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Bca_GomB03g90070.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Bca_GomB03g90080.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Bca_GomB03g92730.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Bca_GomB04g03510.mRNA1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB04g16790.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB04g24190.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB04g24200.mRNA1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB04g26990.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB04g27250.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB04g32230.mRNA1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Bca_GomB04g33350.mRNA2 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB04g33580.mRNA1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB04g36630.mRNA1 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB04g40510.mRNA2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB04g40820.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB04g49180.mRNA1 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49200.mRNA3 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49210.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49230.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH