PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.48% Alkaloid pathway 22.81% Phenylpropanoid pathway 21.11% Flavonoid pathway 10.69% Rosmarinic acid pathway 8.78% Steroid pathway 7.12%
Family Distribution
BAHD 6.45% C3'H/CYP98A 6.11% C4H 6.07% POD 4.08% 4CL 4.04% CYP76 3.92% IFS 3.77% F3H 3.13%
Other Families 62.45%
More Families (98)
T3O 379 3.07% UGT 355 2.88% NMT 328 2.66% DWF4/CYP90B1 322 2.61% 7DLGT 318 2.58% UFGT 318 2.58% CODM/T6ODM 249 2.02% BR6OX2/CYP85A2 231 1.87% SGD 222 1.8% STR 219 1.77% F3'H/CYP75B 213 1.73% SMT1/SMT2/SMT3 200 1.62% H6H 193 1.56% CYP71 180 1.46% TRI/TRII 171 1.39% CSE 147 1.19% PYKS 136 1.1% CAD 121 0.98% CAS 118 0.96% T16H 112 0.91% SLS 111 0.9% LAC 109 0.88% FNS 107 0.87% BBE 106 0.86% COMT 106 0.86% IFR 105 0.85% IO 99 0.8% TPS 98 0.79% CYP90D1 96 0.78% RAS 95 0.77% ANR 89 0.72% GES 87 0.7% PAL 87 0.7% TAT 83 0.67% LAMT 79 0.64% G8O/G8H 78 0.63% F3'5'H/CYP75A 72 0.58% 16OMT 68 0.55% F5H/CYP84A 67 0.54% GS 66 0.53% HCT 65 0.53% CCR 60 0.49% CPD/CYP90A1 56 0.45% 8HGO 54 0.44% 7DLH 52 0.42% ANS/LDOX 52 0.42% CYP51G1 52 0.42% CPR 48 0.39% COR 47 0.38% BR6OX1/CYP85A1 47 0.38% GGPPS 41 0.33% NCS 40 0.32% CHS 38 0.31% SQE 37 0.3% HMGR 36 0.29% PMT 33 0.27% FPPS 33 0.27% CCoAOMT 30 0.24% SQS/FDFT1 26 0.21% AACT 26 0.21% MPO 25 0.2% ROT3/CYP90C1 24 0.19% MVD 24 0.19% CYP80B1 23 0.19% CNMT 22 0.18% SMO1/SMO2 22 0.18% DFR 20 0.16% DWF7 20 0.16% MVK 20 0.16% ISY 18 0.15% TYDC_DDC 18 0.15% XMT_MXMT_DXMT 17 0.14% FLS 17 0.14% CYP80F1 16 0.13% HPPR 16 0.13% ADC 13 0.11% DWF1 13 0.11% DXS 13 0.11% TDC 12 0.1% HYD1 12 0.1% IDI 12 0.1% PMK 12 0.1% CHI 11 0.09% DET2 11 0.09% MCT/IspD 11 0.09% CYP719 8 0.06% 6OMT_4OMT_SOMT 8 0.06% HDR/IspH 8 0.06% DWF5 7 0.06% HDS/IspG 7 0.06% CPI1 6 0.05% FK 6 0.05% HMGS 5 0.04% DXR 5 0.04% GPPS 4 0.03% MDS/IspF 4 0.03% CMK/IspE 3 0.02% ODC 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Bca_GomB04g49260.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g55760.mRNA2 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB04g69800.mRNA1 Alkaloid NMT low borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomB04g70270.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB04g70470.mRNA1 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB05g01710.mRNA1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Bca_GomB05g02230.mRNA1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g03120.mRNA1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB05g06610.mRNA1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Bca_GomB05g07640.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB05g13350.mRNA1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Bca_GomB05g18010.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB05g20160.mRNA1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Bca_GomB05g22110.mRNA2 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomB05g34560.mRNA1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB05g35360.mRNA1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g35370.mRNA1 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g35380.mRNA1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g35730.mRNA1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Bca_GomB05g39750.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB05g40310.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB05g40970.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB05g40980.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB05g42360.mRNA1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bca_GomB05g45180.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB05g45290.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB05g50610.mRNA1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bca_GomB05g53940.mRNA2 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB05g65080.mRNA1 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bca_GomB05g74160.mRNA2 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Bca_GomB05g85920.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB05g86490.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB05g91480.mRNA1 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Bca_GomB05g91640.mRNA1 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Bca_GomB06g05990.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB06g06000.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB06g06010.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB06g06340.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB06g07810.mRNA1 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Bca_GomB06g23060.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB06g33350.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB06g35630.mRNA1 Alkaloid NMT low borderline NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB06g37230.mRNA1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Bca_GomB06g43960.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB06g62580.mRNA1 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB06g63140.mRNA1 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bca_GomB06g66870.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB06g71300.mRNA1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Bca_GomB06g81990.mRNA2 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB07g01750.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH