PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Bca_GomB07g02150.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Bca_GomB07g03140.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB07g03150.mRNA1 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB07g09150.mRNA1 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bca_GomB07g09420.mRNA1 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB07g09450.mRNA1 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB07g10360.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB07g19340.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB07g19440.mRNA1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomB07g26770.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomB07g44760.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Bca_GomB07g44770.mRNA1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Bca_GomB07g48570.mRNA1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB07g55320.mRNA1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB07g56230.mRNA2 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB07g72780.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB07g72830.mRNA1 Alkaloid NMT medium pass NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB07g74100.mRNA1 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB08g02510.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB08g02540.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB08g10360.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB08g10520.mRNA1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Bca_GomB08g10990.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bca_GomB08g37930.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB08g38360.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB08g42350.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g42400.mRNA1 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g46630.mRNA1 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB08g56200.mRNA1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Bca_GomB08g83920.mRNA1 Alkaloid NMT medium pass NMT__00062__sp_Q9SCP7_NAMT1_ARATH
Bca_GomB08g87930.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomB08g95480.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g95500.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g95520.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g95530.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g95560.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g95570.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB08g95600.mRNA1 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC01g06450.mRNA1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Bca_GomC01g13370.mRNA1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Bca_GomC01g28060.mRNA1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomC01g29950.mRNA1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomC01g37190.mRNA1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bca_GomC01g40020.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomC01g40050.mRNA2 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bca_GomC01g42180.mRNA1 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
Bca_GomC01g48570.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bca_GomC02g03670.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC02g03940.mRNA1 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Bca_GomC02g05640.mRNA1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH