PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Bca_GomC08g30260.mRNA1 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bca_GomC08g36010.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomC08g42780.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomC08g45030.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomC08g46960.mRNA1 Alkaloid NMT medium pass NMT__00051__sp_Q96565_AMNMT_HORVV
Bca_GomC08g49080.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomC08g49090.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomC08g57710.mRNA1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Bca_GomC08g62960.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomC08g64390.mRNA1 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Bca_GomC08g64420.mRNA1 Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Bca_GomC08g66430.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bca_GomC09g03860.mRNA1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Bca_GomC09g04160.mRNA1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Bca_GomC09g09100.mRNA1 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Bca_GomC09g15600.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomC09g20130.mRNA1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Bca_GomC09g22540.mRNA1 Alkaloid NMT low borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomC09g26920.mRNA1 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bca_GomC09g28910.mRNA1 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomC09g35330.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Bca_GomC09g36000.mRNA1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Bca_GomC09g36500.mRNA1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bca_GomC09g44240.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomC09g53890.mRNA1 Alkaloid NMT low borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomC09g56390.mRNA2 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bca_GomC09g60610.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomC09g60620.mRNA2 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH