PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g05430.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB01g06800.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB01g06810.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB01g06870.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB01g06890.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB01g08010.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB01g13810.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB01g14970.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB01g18220.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB01g18450.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g23590.mRNA1 Phenylpropanoid POD low borderline POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB01g27960.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomB01g33540.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB01g33610.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB01g39720.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB01g40960.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g41150.mRNA1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g41210.mRNA1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g44920.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB01g45620.mRNA1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bca_GomB01g52020.mRNA1 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Bca_GomB01g52060.mRNA1 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Bca_GomB01g52400.mRNA1 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Bca_GomB01g56680.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g57330.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g57820.mRNA1 Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
Bca_GomB01g60730.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB01g62590.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB01g65030.mRNA1 Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
Bca_GomB01g68020.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB01g72460.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB01g74390.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomB01g77680.mRNA1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bca_GomB01g78360.mRNA1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bca_GomB02g03170.mRNA1 Phenylpropanoid POD low borderline POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB02g03740.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB02g102740.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB02g11830.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB02g11840.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB02g12470.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB02g12480.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB02g12600.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB02g17890.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB02g17900.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB02g18010.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB02g18020.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB02g21340.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomB02g25510.mRNA1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bca_GomB02g37280.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB02g37290.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH