PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Bca_GomB03g42280.mRNA2 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bca_GomB03g44660.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomB03g52320.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB03g53920.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB03g55520.mRNA1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bca_GomB03g58760.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB03g62070.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB03g62510.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB03g69990.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB03g70350.mRNA1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
Bca_GomB03g74040.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB03g80140.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB03g80150.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB03g83850.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB03g84580.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB04g08640.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB04g09200.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB04g18990.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomB04g22700.mRNA1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bca_GomB04g22710.mRNA1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bca_GomB04g23190.mRNA1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bca_GomB04g24840.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomB04g30850.mRNA1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bca_GomB04g40530.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomB04g40850.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomB04g42380.mRNA1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB04g42390.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB04g43120.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB04g43450.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB04g56620.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB04g56950.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB05g05990.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g09650.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB05g12090.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g12920.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g12990.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g13420.mRNA1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
Bca_GomB05g15270.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB05g19580.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g24670.mRNA1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bca_GomB05g24730.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB05g29740.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB05g34840.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g38370.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB05g45000.mRNA1 Phenylpropanoid POD low borderline POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB05g45060.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB05g53790.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB05g58280.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomB05g58780.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB05g59850.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA