PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Bca_GomB05g61600.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB05g63280.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g65470.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB05g71180.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomB05g74720.mRNA1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bca_GomB05g74850.mRNA1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bca_GomB05g74890.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB05g77990.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB05g84560.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB05g85790.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g04710.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB06g04930.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB06g06600.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB06g06610.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g06620.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g09410.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g09420.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g09430.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g14460.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomB06g22880.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomB06g27770.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g27780.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g27800.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g28320.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g28330.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g28340.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g32410.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB06g32750.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB06g33280.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB06g38100.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB06g39430.mRNA1 Phenylpropanoid POD medium pass POD__00004__sp_O04005_REHY_ARATH
Bca_GomB06g40040.mRNA1 Phenylpropanoid POD medium pass POD__00022__sp_Q9LU86_PRXQ_ARATH
Bca_GomB06g42160.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomB06g55840.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB06g56570.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomB06g58460.mRNA2 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g58470.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g58480.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB06g70980.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB06g74440.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomB06g87320.mRNA1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bca_GomB07g02330.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomB07g07740.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB07g08950.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB07g10600.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB07g10800.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomB07g13550.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB07g13850.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomB07g14990.mRNA1 Phenylpropanoid POD medium pass POD__00020__sp_Q9FE01_APX2_ORYSJ
Bca_GomB07g16260.mRNA1 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ