PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Bca_GomC04g39270.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC04g39290.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC04g39390.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC04g48870.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomC04g48900.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomC04g49010.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC04g52470.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC04g58230.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomC04g59540.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomC04g59550.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomC04g61850.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC04g63230.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC05g06240.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC05g06250.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC05g06260.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC05g08930.mRNA1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bca_GomC05g15370.mRNA1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomC05g16290.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomC05g16490.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomC05g27560.mRNA1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bca_GomC05g34290.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC05g34590.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC05g42590.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC05g44710.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomC05g47380.mRNA1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bca_GomC05g48220.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomC05g55180.mRNA1 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Bca_GomC05g57920.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomC06g03920.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomC06g14050.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomC06g18080.mRNA1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bca_GomC06g19470.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC06g19720.mRNA1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC06g22760.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC06g25290.mRNA1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bca_GomC06g25860.mRNA1 Phenylpropanoid POD medium pass POD__00004__sp_O04005_REHY_ARATH
Bca_GomC06g32990.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomC06g33210.mRNA1 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bca_GomC06g39680.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomC06g41340.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bca_GomC06g41680.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomC06g43520.mRNA1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bca_GomC06g43760.mRNA1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bca_GomC06g46460.mRNA1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bca_GomC06g49450.mRNA1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bca_GomC06g55360.mRNA1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bca_GomC06g55640.mRNA1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
Bca_GomC07g00400.mRNA1 Phenylpropanoid POD medium pass POD__00022__sp_Q9LU86_PRXQ_ARATH
Bca_GomC07g01640.mRNA1 Phenylpropanoid POD medium pass POD__00004__sp_O04005_REHY_ARATH
Bca_GomC07g01920.mRNA1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH