PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Bca_GomB04g27100.mRNA1 Alkaloid PYKS low borderline
Bca_GomB04g37300.mRNA1 Alkaloid PYKS low borderline
Bca_GomB04g43150.mRNA1 Alkaloid PYKS low borderline
Bca_GomB04g43480.mRNA1 Alkaloid PYKS low borderline
Bca_GomB04g43710.mRNA1 Alkaloid PYKS low borderline
Bca_GomB04g43720.mRNA1 Alkaloid PYKS low borderline
Bca_GomB04g51150.mRNA1 Alkaloid PYKS low borderline
Bca_GomB05g14220.mRNA1 Alkaloid PYKS high pass
Bca_GomB05g14300.mRNA1 Alkaloid PYKS high pass
Bca_GomB05g14440.mRNA1 Alkaloid PYKS high pass
Bca_GomB05g39610.mRNA1 Alkaloid PYKS medium pass
Bca_GomB05g39620.mRNA1 Alkaloid PYKS low borderline
Bca_GomB05g45450.mRNA1 Alkaloid PYKS low borderline
Bca_GomB05g45620.mRNA1 Alkaloid PYKS low borderline
Bca_GomB05g77730.mRNA1 Alkaloid PYKS low borderline
Bca_GomB05g80620.mRNA1 Alkaloid PYKS low borderline
Bca_GomB06g13300.mRNA1 Alkaloid PYKS low borderline
Bca_GomB06g13470.mRNA1 Alkaloid PYKS low borderline
Bca_GomB06g55980.mRNA1 Alkaloid PYKS low borderline
Bca_GomB06g56450.mRNA1 Alkaloid PYKS low borderline
Bca_GomB06g56480.mRNA1 Alkaloid PYKS low borderline
Bca_GomB06g61240.mRNA1 Alkaloid PYKS low borderline
Bca_GomB07g05370.mRNA1 Alkaloid PYKS low borderline
Bca_GomB07g06370.mRNA1 Alkaloid PYKS low borderline
Bca_GomB07g13160.mRNA1 Alkaloid PYKS low borderline
Bca_GomB08g10500.mRNA1 Alkaloid PYKS high pass
Bca_GomB08g54930.mRNA1 Alkaloid PYKS high pass
Bca_GomB08g55990.mRNA1 Alkaloid PYKS high pass
Bca_GomB08g74790.mRNA1 Alkaloid PYKS low borderline
Bca_GomB08g74880.mRNA1 Alkaloid PYKS low borderline
Bca_GomC01g07390.mRNA1 Alkaloid PYKS high pass
Bca_GomC01g07940.mRNA2 Alkaloid PYKS low borderline
Bca_GomC01g56730.mRNA1 Alkaloid PYKS low borderline
Bca_GomC01g56740.mRNA1 Alkaloid PYKS low borderline
Bca_GomC02g03460.mRNA1 Alkaloid PYKS low borderline
Bca_GomC02g25900.mRNA1 Alkaloid PYKS low borderline
Bca_GomC02g42580.mRNA1 Alkaloid PYKS low borderline
Bca_GomC02g53880.mRNA1 Alkaloid PYKS medium pass
Bca_GomC02g53890.mRNA1 Alkaloid PYKS high pass
Bca_GomC02g54130.mRNA1 Alkaloid PYKS low borderline
Bca_GomC03g07550.mRNA1 Alkaloid PYKS low borderline
Bca_GomC03g13360.mRNA1 Alkaloid PYKS high pass
Bca_GomC03g36520.mRNA1 Alkaloid PYKS high pass
Bca_GomC03g38300.mRNA1 Alkaloid PYKS high pass
Bca_GomC03g60560.mRNA1 Alkaloid PYKS low borderline
Bca_GomC03g60570.mRNA1 Alkaloid PYKS low borderline
Bca_GomC04g02200.mRNA1 Alkaloid PYKS low borderline
Bca_GomC04g22170.mRNA1 Alkaloid PYKS low borderline
Bca_GomC04g48800.mRNA1 Alkaloid PYKS low borderline
Bca_GomC04g50790.mRNA1 Alkaloid PYKS low borderline