PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.48% Alkaloid pathway 22.81% Phenylpropanoid pathway 21.11% Flavonoid pathway 10.69% Rosmarinic acid pathway 8.78% Steroid pathway 7.12%
Family Distribution
BAHD 6.45% C3'H/CYP98A 6.11% C4H 6.07% POD 4.08% 4CL 4.04% CYP76 3.92% IFS 3.77% F3H 3.13%
Other Families 62.45%
More Families (98)
T3O 379 3.07% UGT 355 2.88% NMT 328 2.66% DWF4/CYP90B1 322 2.61% 7DLGT 318 2.58% UFGT 318 2.58% CODM/T6ODM 249 2.02% BR6OX2/CYP85A2 231 1.87% SGD 222 1.8% STR 219 1.77% F3'H/CYP75B 213 1.73% SMT1/SMT2/SMT3 200 1.62% H6H 193 1.56% CYP71 180 1.46% TRI/TRII 171 1.39% CSE 147 1.19% PYKS 136 1.1% CAD 121 0.98% CAS 118 0.96% T16H 112 0.91% SLS 111 0.9% LAC 109 0.88% FNS 107 0.87% BBE 106 0.86% COMT 106 0.86% IFR 105 0.85% IO 99 0.8% TPS 98 0.79% CYP90D1 96 0.78% RAS 95 0.77% ANR 89 0.72% GES 87 0.7% PAL 87 0.7% TAT 83 0.67% LAMT 79 0.64% G8O/G8H 78 0.63% F3'5'H/CYP75A 72 0.58% 16OMT 68 0.55% F5H/CYP84A 67 0.54% GS 66 0.53% HCT 65 0.53% CCR 60 0.49% CPD/CYP90A1 56 0.45% 8HGO 54 0.44% 7DLH 52 0.42% ANS/LDOX 52 0.42% CYP51G1 52 0.42% CPR 48 0.39% COR 47 0.38% BR6OX1/CYP85A1 47 0.38% GGPPS 41 0.33% NCS 40 0.32% CHS 38 0.31% SQE 37 0.3% HMGR 36 0.29% PMT 33 0.27% FPPS 33 0.27% CCoAOMT 30 0.24% SQS/FDFT1 26 0.21% AACT 26 0.21% MPO 25 0.2% ROT3/CYP90C1 24 0.19% MVD 24 0.19% CYP80B1 23 0.19% CNMT 22 0.18% SMO1/SMO2 22 0.18% DFR 20 0.16% DWF7 20 0.16% MVK 20 0.16% ISY 18 0.15% TYDC_DDC 18 0.15% XMT_MXMT_DXMT 17 0.14% FLS 17 0.14% CYP80F1 16 0.13% HPPR 16 0.13% ADC 13 0.11% DWF1 13 0.11% DXS 13 0.11% TDC 12 0.1% HYD1 12 0.1% IDI 12 0.1% PMK 12 0.1% CHI 11 0.09% DET2 11 0.09% MCT/IspD 11 0.09% CYP719 8 0.06% 6OMT_4OMT_SOMT 8 0.06% HDR/IspH 8 0.06% DWF5 7 0.06% HDS/IspG 7 0.06% CPI1 6 0.05% FK 6 0.05% HMGS 5 0.04% DXR 5 0.04% GPPS 4 0.03% MDS/IspF 4 0.03% CMK/IspE 3 0.02% ODC 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomC08g00120.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g15190.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g15280.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g25930.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g42870.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g42890.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g42900.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g42910.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g44690.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g44910.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g44920.mRNA1 Alkaloid SGD low borderline
Bca_GomC08g44930.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g46380.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g46390.mRNA1 Alkaloid SGD medium pass
Bca_GomC08g68860.mRNA1 Alkaloid SGD medium pass
Bca_GomC09g14360.mRNA1 Alkaloid SGD medium pass
Bca_GomC09g14370.mRNA1 Alkaloid SGD medium pass
Bca_GomC09g14380.mRNA1 Alkaloid SGD medium pass
Bca_GomC09g36670.mRNA1 Alkaloid SGD medium pass
Bca_GomC09g40750.mRNA1 Alkaloid SGD medium pass
Bca_GomC09g43510.mRNA1 Alkaloid SGD low borderline
Bca_GomC09g63970.mRNA1 Alkaloid SGD low borderline