PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status Best Target
Bca_GomB01g11020.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB01g25190.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB01g29780.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB01g48040.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g17320.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g19100.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g68740.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g68750.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g68760.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g69080.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g69090.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g69360.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g69370.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g69380.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g77920.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g98790.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g98800.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g98840.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g98860.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB02g99510.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g20610.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g20620.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g20630.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g21360.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g21380.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g36570.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g52220.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB03g65140.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB04g23020.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB04g34370.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB04g34380.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB04g34620.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB05g01150.mRNA1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
Bca_GomB05g10620.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB05g10630.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB05g44010.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB05g76090.mRNA1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
Bca_GomB05g81210.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB05g84460.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB06g13610.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB06g17040.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB06g32080.mRNA1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
Bca_GomB06g32550.mRNA1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
Bca_GomB06g55590.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB06g69210.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB06g70810.mRNA1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
Bca_GomB07g19260.mRNA1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
Bca_GomB07g19280.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB07g19410.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
Bca_GomB07g30350.mRNA1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO