Brassica carinata (brassica_carinata)
/
Imported from atlas release summary for Brassica carinata.
4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4874
Candidate Genes
BAHD
6.45%
C3'H/CYP98A
6.11%
C4H
6.07%
POD
4.08%
4CL
4.04%
CYP76
3.92%
IFS
3.77%
F3H
3.13%
Other Families
62.45%
More Families (98)
T3O
379
3.07%
UGT
355
2.88%
NMT
328
2.66%
DWF4/CYP90B1
322
2.61%
7DLGT
318
2.58%
UFGT
318
2.58%
CODM/T6ODM
249
2.02%
BR6OX2/CYP85A2
231
1.87%
SGD
222
1.8%
STR
219
1.77%
F3'H/CYP75B
213
1.73%
SMT1/SMT2/SMT3
200
1.62%
H6H
193
1.56%
CYP71
180
1.46%
TRI/TRII
171
1.39%
CSE
147
1.19%
PYKS
136
1.1%
CAD
121
0.98%
CAS
118
0.96%
T16H
112
0.91%
SLS
111
0.9%
LAC
109
0.88%
FNS
107
0.87%
BBE
106
0.86%
COMT
106
0.86%
IFR
105
0.85%
IO
99
0.8%
TPS
98
0.79%
CYP90D1
96
0.78%
RAS
95
0.77%
ANR
89
0.72%
GES
87
0.7%
PAL
87
0.7%
TAT
83
0.67%
LAMT
79
0.64%
G8O/G8H
78
0.63%
F3'5'H/CYP75A
72
0.58%
16OMT
68
0.55%
F5H/CYP84A
67
0.54%
GS
66
0.53%
HCT
65
0.53%
CCR
60
0.49%
CPD/CYP90A1
56
0.45%
8HGO
54
0.44%
7DLH
52
0.42%
ANS/LDOX
52
0.42%
CYP51G1
52
0.42%
CPR
48
0.39%
COR
47
0.38%
BR6OX1/CYP85A1
47
0.38%
GGPPS
41
0.33%
NCS
40
0.32%
CHS
38
0.31%
SQE
37
0.3%
HMGR
36
0.29%
PMT
33
0.27%
FPPS
33
0.27%
CCoAOMT
30
0.24%
SQS/FDFT1
26
0.21%
AACT
26
0.21%
MPO
25
0.2%
ROT3/CYP90C1
24
0.19%
MVD
24
0.19%
CYP80B1
23
0.19%
CNMT
22
0.18%
SMO1/SMO2
22
0.18%
DFR
20
0.16%
DWF7
20
0.16%
MVK
20
0.16%
ISY
18
0.15%
TYDC_DDC
18
0.15%
XMT_MXMT_DXMT
17
0.14%
FLS
17
0.14%
CYP80F1
16
0.13%
HPPR
16
0.13%
ADC
13
0.11%
DWF1
13
0.11%
DXS
13
0.11%
TDC
12
0.1%
HYD1
12
0.1%
IDI
12
0.1%
PMK
12
0.1%
CHI
11
0.09%
DET2
11
0.09%
MCT/IspD
11
0.09%
CYP719
8
0.06%
6OMT_4OMT_SOMT
8
0.06%
HDR/IspH
8
0.06%
DWF5
7
0.06%
HDS/IspG
7
0.06%
CPI1
6
0.05%
FK
6
0.05%
HMGS
5
0.04%
DXR
5
0.04%
GPPS
4
0.03%
MDS/IspF
4
0.03%
CMK/IspE
3
0.02%
ODC
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1437 | 22 | BAHD (647) | View species results |
| Alkaloid pathway | 1112 | 25 | SGD (196) | View species results |
| Phenylpropanoid pathway | 1029 | 12 | POD (460) | View species results |
| Flavonoid pathway | 521 | 13 | UFGT (304) | View species results |
| Rosmarinic acid pathway | 428 | 7 | C4H (169) | View species results |
| Steroid pathway | 347 | 14 | SMT1/SMT2/SMT3 (126) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4690 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 956 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bca_GomB04g65300.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB04g67670.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB04g75590.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g06520.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g22410.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g24930.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g36560.mRNA1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB05g36570.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB05g44380.mRNA2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g48430.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g81340.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB05g83360.mRNA1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bca_GomB05g83450.mRNA1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB05g83460.mRNA1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bca_GomB05g87550.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g14440.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB06g18880.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g19030.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g19050.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g20940.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g20950.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g20960.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g21140.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g41710.mRNA2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g50340.mRNA2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g50510.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g50760.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g53370.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g53380.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g54170.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g65790.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g68220.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB06g68990.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB06g69730.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g70660.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g71670.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g77020.mRNA1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB06g79030.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB06g79040.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomB06g79990.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g80000.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g80010.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB06g80020.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB07g00730.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB07g00740.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB07g17350.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB07g20780.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB07g75680.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB07g77600.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomB08g02730.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |