Brassica carinata (brassica_carinata)
/
Imported from atlas release summary for Brassica carinata.
6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
12342
Family-Level Calls
BAHD
6.45%
C3'H/CYP98A
6.11%
C4H
6.07%
POD
4.08%
4CL
4.04%
CYP76
3.92%
IFS
3.77%
F3H
3.13%
Other Families
62.45%
More Families (98)
T3O
379
3.07%
UGT
355
2.88%
NMT
328
2.66%
DWF4/CYP90B1
322
2.61%
7DLGT
318
2.58%
UFGT
318
2.58%
CODM/T6ODM
249
2.02%
BR6OX2/CYP85A2
231
1.87%
SGD
222
1.8%
STR
219
1.77%
F3'H/CYP75B
213
1.73%
SMT1/SMT2/SMT3
200
1.62%
H6H
193
1.56%
CYP71
180
1.46%
TRI/TRII
171
1.39%
CSE
147
1.19%
PYKS
136
1.1%
CAD
121
0.98%
CAS
118
0.96%
T16H
112
0.91%
SLS
111
0.9%
LAC
109
0.88%
FNS
107
0.87%
BBE
106
0.86%
COMT
106
0.86%
IFR
105
0.85%
IO
99
0.8%
TPS
98
0.79%
CYP90D1
96
0.78%
RAS
95
0.77%
ANR
89
0.72%
GES
87
0.7%
PAL
87
0.7%
TAT
83
0.67%
LAMT
79
0.64%
G8O/G8H
78
0.63%
F3'5'H/CYP75A
72
0.58%
16OMT
68
0.55%
F5H/CYP84A
67
0.54%
GS
66
0.53%
HCT
65
0.53%
CCR
60
0.49%
CPD/CYP90A1
56
0.45%
8HGO
54
0.44%
7DLH
52
0.42%
ANS/LDOX
52
0.42%
CYP51G1
52
0.42%
CPR
48
0.39%
COR
47
0.38%
BR6OX1/CYP85A1
47
0.38%
GGPPS
41
0.33%
NCS
40
0.32%
CHS
38
0.31%
SQE
37
0.3%
HMGR
36
0.29%
PMT
33
0.27%
FPPS
33
0.27%
CCoAOMT
30
0.24%
SQS/FDFT1
26
0.21%
AACT
26
0.21%
MPO
25
0.2%
ROT3/CYP90C1
24
0.19%
MVD
24
0.19%
CYP80B1
23
0.19%
CNMT
22
0.18%
SMO1/SMO2
22
0.18%
DFR
20
0.16%
DWF7
20
0.16%
MVK
20
0.16%
ISY
18
0.15%
TYDC_DDC
18
0.15%
XMT_MXMT_DXMT
17
0.14%
FLS
17
0.14%
CYP80F1
16
0.13%
HPPR
16
0.13%
ADC
13
0.11%
DWF1
13
0.11%
DXS
13
0.11%
TDC
12
0.1%
HYD1
12
0.1%
IDI
12
0.1%
PMK
12
0.1%
CHI
11
0.09%
DET2
11
0.09%
MCT/IspD
11
0.09%
CYP719
8
0.06%
6OMT_4OMT_SOMT
8
0.06%
HDR/IspH
8
0.06%
DWF5
7
0.06%
HDS/IspG
7
0.06%
CPI1
6
0.05%
FK
6
0.05%
HMGS
5
0.04%
DXR
5
0.04%
GPPS
4
0.03%
MDS/IspF
4
0.03%
CMK/IspE
3
0.02%
ODC
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1437 | 22 | BAHD (647) | View species results |
| Alkaloid pathway | 1112 | 25 | SGD (196) | View species results |
| Phenylpropanoid pathway | 1029 | 12 | POD (460) | View species results |
| Flavonoid pathway | 521 | 13 | UFGT (304) | View species results |
| Rosmarinic acid pathway | 428 | 7 | C4H (169) | View species results |
| Steroid pathway | 347 | 14 | SMT1/SMT2/SMT3 (126) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4690 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 956 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bca_GomC04g11490.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g11500.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g11540.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g11790.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g31950.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC04g33560.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC04g33610.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC04g35090.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g35140.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g35160.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g35170.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g35180.mRNA2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g41720.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g48970.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g49340.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC04g51940.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g57770.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g58350.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g58420.mRNA2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g58770.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g58830.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC04g67460.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g09480.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC05g09830.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC05g10840.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g17280.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g17290.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g17650.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g20260.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g35030.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g40950.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g43660.mRNA1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g43740.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC05g48940.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g06970.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g06990.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g07260.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g07320.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g09430.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g17710.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g20110.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g26090.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g28460.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC06g30690.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bca_GomC06g33280.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g39460.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g49750.mRNA1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bca_GomC06g51770.mRNA1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bca_GomC06g52460.mRNA1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bca_GomC07g15970.mRNA1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |