PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TAT
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Gene Pathway Family Confidence Status
Bca_GomC01g56120.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC01g56130.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC01g56140.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC02g02340.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC02g35710.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC02g61510.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC02g61520.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC03g01490.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC03g29900.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC03g31190.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC03g38110.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC03g86870.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC03g91240.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC04g08670.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC04g60530.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC05g37980.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC06g33720.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC06g58160.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g17220.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g17230.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g17250.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g53860.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g53870.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g53880.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g53900.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g53910.mRNA2 Rosmarinic Acid TAT medium pass
Bca_GomC07g57690.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC07g67400.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC08g15420.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC08g48100.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC08g50030.mRNA1 Rosmarinic Acid TAT low borderline
Bca_GomC08g51820.mRNA1 Rosmarinic Acid TAT medium pass
Bca_GomC09g24880.mRNA1 Rosmarinic Acid TAT medium pass