PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
Bca_GomC01g18900.mRNA1 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
Bca_GomC01g29610.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC01g29630.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC01g48710.mRNA1 Terpenoid TPS medium pass TPS__00040__sp_A0A348AUV6_TPS1B_CAMHI
Bca_GomC01g57020.mRNA1 Terpenoid TPS medium pass TPS__00077__sp_D2YZP9_BISS_ZINOF
Bca_GomC02g00090.mRNA1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Bca_GomC02g20970.mRNA1 Terpenoid TPS medium pass TPS__00001__sp_A0A0D4D912_TPS3_XANST
Bca_GomC02g43360.mRNA1 Terpenoid TPS medium pass TPS__00044__sp_A0A348AUW1_TPS1G_CAMHI
Bca_GomC03g02580.mRNA1 Terpenoid TPS low borderline TPS__00051__sp_A0A7G5KLV1_TPS2_CANOD
Bca_GomC03g36390.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC03g36400.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC03g38410.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC03g40960.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC03g42840.mRNA1 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Bca_GomC03g50430.mRNA1 Terpenoid TPS medium pass TPS__00061__sp_B9SBU9_TPS5_RICCO
Bca_GomC03g50470.mRNA1 Terpenoid TPS medium pass TPS__00040__sp_A0A348AUV6_TPS1B_CAMHI
Bca_GomC03g50480.mRNA1 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Bca_GomC03g84630.mRNA1 Terpenoid TPS medium pass TPS__00040__sp_A0A348AUV6_TPS1B_CAMHI
Bca_GomC04g22510.mRNA1 Terpenoid TPS low borderline TPS__00148__sp_O64961_TPS9_SOLLC
Bca_GomC04g25930.mRNA1 Terpenoid TPS medium pass TPS__00061__sp_B9SBU9_TPS5_RICCO
Bca_GomC04g26510.mRNA1 Terpenoid TPS low borderline TPS__00128__sp_J7LMP2_TPS5_PHYDL
Bca_GomC04g26540.mRNA1 Terpenoid TPS medium pass TPS__00061__sp_B9SBU9_TPS5_RICCO
Bca_GomC04g26550.mRNA1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Bca_GomC04g26800.mRNA2 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
Bca_GomC04g39920.mRNA1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
Bca_GomC05g51110.mRNA1 Terpenoid TPS medium pass TPS__00057__sp_B0FGA9_GAS2_HELAN
Bca_GomC06g32580.mRNA1 Terpenoid TPS medium pass TPS__00061__sp_B9SBU9_TPS5_RICCO
Bca_GomC06g57410.mRNA1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
Bca_GomC07g28450.mRNA1 Terpenoid TPS medium pass TPS__00117__sp_G8H5M7_TPS9_SOLHA
Bca_GomC07g28470.mRNA1 Terpenoid TPS low borderline TPS__00115__sp_G5CV52_TPS17_SOLLC
Bca_GomC07g35370.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC07g35390.mRNA1 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC07g43400.mRNA2 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
Bca_GomC07g44860.mRNA4 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Bca_GomC07g45060.mRNA1 Terpenoid TPS low borderline TPS__00061__sp_B9SBU9_TPS5_RICCO
Bca_GomC07g45100.mRNA1 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Bca_GomC07g51590.mRNA1 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Bca_GomC07g51600.mRNA1 Terpenoid TPS low borderline TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA
Bca_GomC08g16730.mRNA2 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC08g48740.mRNA2 Terpenoid TPS medium pass TPS__00149__sp_P0DI76_CIN1_ARATH
Bca_GomC09g04740.mRNA1 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Bca_GomC09g11440.mRNA1 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Bca_GomC09g11860.mRNA1 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI
Bca_GomC09g18950.mRNA1 Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
Bca_GomC09g19310.mRNA1 Terpenoid TPS low borderline TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
Bca_GomC09g19480.mRNA1 Terpenoid TPS medium pass TPS__00040__sp_A0A348AUV6_TPS1B_CAMHI
Bca_GomC09g20970.mRNA1 Terpenoid TPS low borderline TPS__00025__sp_A0A1V0QSG6_TS4FN_CANSA
Bca_GomC09g45730.mRNA1 Terpenoid TPS medium pass TPS__00040__sp_A0A348AUV6_TPS1B_CAMHI