PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status
Bca_GomB04g03840.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g19960.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g19990.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g20260.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g20270.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g33770.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g52080.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g66780.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB04g69310.mRNA1 Alkaloid TRI/TRII medium borderline
Bca_GomB05g44630.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB05g44700.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB05g47260.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB05g50160.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB05g75270.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g02930.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g12310.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g12550.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g15280.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB06g15360.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB06g20750.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB06g29850.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g29860.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34780.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34790.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34810.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34820.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34840.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34890.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34910.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g34990.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g56980.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g75120.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g76160.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB06g79860.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB06g79870.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB07g26900.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB07g30640.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB07g31400.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB07g35030.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB07g54590.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB07g70820.mRNA1 Alkaloid TRI/TRII medium borderline
Bca_GomB07g75240.mRNA1 Alkaloid TRI/TRII medium borderline
Bca_GomB07g77010.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB08g05350.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB08g40340.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB08g43040.mRNA1 Alkaloid TRI/TRII low borderline
Bca_GomB08g43050.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB08g43060.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB08g59630.mRNA1 Alkaloid TRI/TRII medium pass
Bca_GomB08g63210.mRNA1 Alkaloid TRI/TRII medium pass