PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Bca_GomB01g42860.mRNA1 Phenylpropanoid CAD medium pass CAD__00010__sp_P48523_CADH4_ARATH
Bca_GomB01g71030.mRNA1 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB02g102300.mRNA1 Phenylpropanoid CAD medium pass CAD__00008__sp_O49482_CADH5_ARATH
Bca_GomB02g17130.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB02g17230.mRNA1 Phenylpropanoid CAD medium pass CAD__00017__sp_Q9SJ25_CADH2_ARATH
Bca_GomB02g39100.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB02g56250.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB02g59960.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB02g60030.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB02g60260.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB02g67280.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB02g67290.mRNA1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB02g67340.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB02g76260.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB02g89630.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB02g95570.mRNA1 Phenylpropanoid CAD medium pass CAD__00008__sp_O49482_CADH5_ARATH
Bca_GomB02g98900.mRNA1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Bca_GomB03g45640.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB03g63790.mRNA1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomB03g64370.mRNA1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Bca_GomB03g65110.mRNA2 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB03g70010.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB03g84260.mRNA1 Phenylpropanoid CAD low borderline CAD__00010__sp_P48523_CADH4_ARATH
Bca_GomB04g02240.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB04g20790.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB04g32620.mRNA1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB04g47300.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g47310.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g47320.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g47330.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g47340.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g67700.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g67710.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB04g75710.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB05g03980.mRNA1 Phenylpropanoid CAD low borderline CAD__00010__sp_P48523_CADH4_ARATH
Bca_GomB05g11420.mRNA1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Bca_GomB05g11430.mRNA1 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Bca_GomB05g33950.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB05g34370.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB05g78020.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB06g27330.mRNA1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bca_GomB06g82840.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB06g82900.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB06g82980.mRNA1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bca_GomB07g12270.mRNA1 Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Bca_GomB07g12320.mRNA1 Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Bca_GomB07g12340.mRNA1 Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Bca_GomB07g27560.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB07g28050.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bca_GomB07g64590.mRNA1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR