PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomB07g52220.mRNA1 Alkaloid GES medium pass
Bca_GomB07g52520.mRNA1 Alkaloid GES medium pass
Bca_GomB07g52530.mRNA1 Alkaloid GES medium pass
Bca_GomB07g60030.mRNA1 Alkaloid GES low borderline
Bca_GomB08g44960.mRNA1 Alkaloid GES medium pass
Bca_GomB08g48330.mRNA1 Alkaloid GES medium pass
Bca_GomB08g51170.mRNA1 Alkaloid GES medium pass
Bca_GomB08g59280.mRNA1 Alkaloid GES low borderline
Bca_GomC01g03420.mRNA1 Alkaloid GES low borderline
Bca_GomC01g03790.mRNA1 Alkaloid GES low borderline
Bca_GomC01g18330.mRNA1 Alkaloid GES medium pass
Bca_GomC01g18900.mRNA1 Alkaloid GES medium pass
Bca_GomC01g29610.mRNA1 Alkaloid GES medium pass
Bca_GomC01g29630.mRNA1 Alkaloid GES medium pass
Bca_GomC01g48710.mRNA1 Alkaloid GES medium pass
Bca_GomC02g20970.mRNA1 Alkaloid GES low borderline
Bca_GomC02g43360.mRNA1 Alkaloid GES low borderline
Bca_GomC03g02580.mRNA1 Alkaloid GES low borderline
Bca_GomC03g36380.mRNA1 Alkaloid GES medium pass
Bca_GomC03g36390.mRNA1 Alkaloid GES medium pass
Bca_GomC03g36400.mRNA1 Alkaloid GES medium pass
Bca_GomC03g38410.mRNA1 Alkaloid GES medium pass
Bca_GomC03g40960.mRNA1 Alkaloid GES medium pass
Bca_GomC03g50430.mRNA1 Alkaloid GES medium pass
Bca_GomC03g50470.mRNA1 Alkaloid GES medium pass
Bca_GomC03g50480.mRNA1 Alkaloid GES medium pass
Bca_GomC03g84630.mRNA1 Alkaloid GES medium pass
Bca_GomC04g22510.mRNA1 Alkaloid GES low borderline
Bca_GomC04g26540.mRNA1 Alkaloid GES medium pass
Bca_GomC04g26800.mRNA2 Alkaloid GES medium pass
Bca_GomC04g39920.mRNA1 Alkaloid GES medium pass
Bca_GomC05g51110.mRNA1 Alkaloid GES medium pass
Bca_GomC06g32580.mRNA1 Alkaloid GES medium pass
Bca_GomC06g57410.mRNA1 Alkaloid GES medium pass
Bca_GomC07g35370.mRNA1 Alkaloid GES medium pass
Bca_GomC07g35390.mRNA1 Alkaloid GES medium pass
Bca_GomC07g43400.mRNA2 Alkaloid GES medium pass
Bca_GomC07g44860.mRNA4 Alkaloid GES medium pass
Bca_GomC07g45100.mRNA1 Alkaloid GES medium pass
Bca_GomC07g51590.mRNA1 Alkaloid GES medium pass
Bca_GomC07g63640.mRNA1 Alkaloid GES low borderline
Bca_GomC08g16730.mRNA2 Alkaloid GES medium pass
Bca_GomC08g48740.mRNA2 Alkaloid GES medium pass
Bca_GomC09g04740.mRNA1 Alkaloid GES low borderline
Bca_GomC09g11440.mRNA1 Alkaloid GES medium pass
Bca_GomC09g11860.mRNA1 Alkaloid GES medium pass
Bca_GomC09g18950.mRNA1 Alkaloid GES medium pass
Bca_GomC09g19310.mRNA1 Alkaloid GES medium pass
Bca_GomC09g20970.mRNA1 Alkaloid GES low borderline
Bca_GomB01g42860.mRNA1 Alkaloid GS high pass