PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Bca_GomB02g12090.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g12700.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g14690.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g15490.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g19190.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g28370.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g34830.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g43980.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g45390.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g51140.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB02g51150.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB02g51160.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g51170.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g51180.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB02g52820.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g56640.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g58400.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g77840.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g77880.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g78010.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB02g79060.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB02g79070.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g04450.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB03g06940.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g07310.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g26840.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g27300.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g28000.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g28150.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g28160.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g28270.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g28280.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g28300.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g40150.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g40160.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g40170.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g45680.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g46830.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g48660.mRNA2 Alkaloid 7DLGT low borderline
Bca_GomB03g49910.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g51220.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g76520.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g78060.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g84570.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g89210.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g89360.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB03g91070.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB03g96640.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB04g07120.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB04g21390.mRNA1 Alkaloid 7DLGT low borderline