PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Bca_GomB04g21610.mRNA2 Alkaloid 7DLGT low borderline
Bca_GomB04g27610.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB04g28280.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB04g67840.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB04g67850.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB04g67860.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g02160.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g03710.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB05g05190.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g05200.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g05220.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB05g09210.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g09250.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g09480.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g09490.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g09500.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g12720.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g35420.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g35490.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g35500.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g35640.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g35680.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g35750.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g36920.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g36960.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g37010.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g50250.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g54600.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g55160.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g55180.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g55190.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g57030.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g57070.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB05g62540.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB05g88310.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB05g89600.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB06g03710.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g06110.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g21170.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB06g21190.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g21200.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g21330.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB06g31840.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB06g35320.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g35340.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g39340.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB06g58780.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomB06g58920.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomB06g69550.mRNA1 Alkaloid 7DLGT high pass
Bca_GomB07g05210.mRNA1 Alkaloid 7DLGT low borderline