PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Bca_GomB03g90070.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Bca_GomB03g90080.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Bca_GomB03g92730.mRNA1 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Bca_GomB04g03510.mRNA1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB04g16790.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bca_GomB04g24190.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB04g24200.mRNA1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bca_GomB04g26990.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB04g27250.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bca_GomB04g32230.mRNA1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Bca_GomB04g33350.mRNA2 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB04g33580.mRNA1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bca_GomB04g36630.mRNA1 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB04g40510.mRNA2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB04g40820.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bca_GomB04g49180.mRNA1 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49200.mRNA3 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49210.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49230.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g49260.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB04g55760.mRNA2 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB04g69800.mRNA1 Alkaloid NMT low borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bca_GomB04g70270.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB04g70470.mRNA1 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB05g01710.mRNA1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Bca_GomB05g02230.mRNA1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g03120.mRNA1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB05g06610.mRNA1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Bca_GomB05g07640.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Bca_GomB05g13350.mRNA1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Bca_GomB05g18010.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bca_GomB05g20160.mRNA1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Bca_GomB05g22110.mRNA2 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bca_GomB05g34560.mRNA1 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Bca_GomB05g35360.mRNA1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g35370.mRNA1 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g35380.mRNA1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Bca_GomB05g35730.mRNA1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Bca_GomB05g39750.mRNA1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB05g40310.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB05g40970.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB05g40980.mRNA1 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Bca_GomB05g42360.mRNA1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bca_GomB05g45180.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB05g45290.mRNA1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bca_GomB05g50610.mRNA1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bca_GomB05g53940.mRNA2 Alkaloid NMT low borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bca_GomB05g65080.mRNA1 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bca_GomB05g74160.mRNA2 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Bca_GomB05g85920.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH