PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

4874
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Bca_GomC01g41550.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC01g42220.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC01g42250.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC01g42410.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC01g56960.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC01g56970.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC01g57340.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC01g58560.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC02g10460.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC02g13340.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC02g16620.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC02g34770.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC02g36600.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC02g36610.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC03g08190.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g08980.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g16160.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g19640.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC03g23560.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g23570.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g25650.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g27870.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC03g27880.mRNA2 Alkaloid 7DLGT medium pass
Bca_GomC03g33910.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g33920.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g33930.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC03g33960.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g33980.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g38030.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC03g43860.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC03g49810.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g55500.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC03g55510.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g55560.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g60180.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g61160.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC03g62580.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g62860.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g73740.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC03g73810.mRNA1 Alkaloid 7DLGT high pass
Bca_GomC03g86910.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g86920.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC03g90500.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC04g05510.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC04g05520.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC04g05540.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC04g05550.mRNA1 Alkaloid 7DLGT medium pass
Bca_GomC04g05630.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC04g11860.mRNA1 Alkaloid 7DLGT low borderline
Bca_GomC04g11870.mRNA1 Alkaloid 7DLGT low borderline