PlantSME Plant secondary metabolism enzyme database

Brassica carinata (brassica_carinata)

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Imported from atlas release summary for Brassica carinata.

6327
Candidate Protein Records
4874
Pathway-Level Records
12342
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1437 22 BAHD (647) View species results
Alkaloid pathway 1112 25 SGD (196) View species results
Phenylpropanoid pathway 1029 12 POD (460) View species results
Flavonoid pathway 521 13 UFGT (304) View species results
Rosmarinic acid pathway 428 7 C4H (169) View species results
Steroid pathway 347 14 SMT1/SMT2/SMT3 (126) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 956 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Protein/Isoform Record Pathway Family Confidence Status
Bca_GomC04g58990.mRNA1 Alkaloid PYKS high pass
Bca_GomC04g59090.mRNA1 Alkaloid PYKS high pass
Bca_GomC04g59180.mRNA1 Alkaloid PYKS high pass
Bca_GomC05g02930.mRNA3 Alkaloid PYKS low borderline
Bca_GomC05g05070.mRNA1 Alkaloid PYKS low borderline
Bca_GomC05g08800.mRNA2 Alkaloid PYKS low borderline
Bca_GomC05g21950.mRNA1 Alkaloid PYKS low borderline
Bca_GomC05g29220.mRNA1 Alkaloid PYKS low borderline
Bca_GomC06g00530.mRNA1 Alkaloid PYKS low borderline
Bca_GomC06g39980.mRNA1 Alkaloid PYKS low borderline
Bca_GomC06g42020.mRNA3 Alkaloid PYKS low borderline
Bca_GomC07g09540.mRNA1 Alkaloid PYKS low borderline
Bca_GomC07g09840.mRNA1 Alkaloid PYKS low borderline
Bca_GomC07g10930.mRNA1 Alkaloid PYKS low borderline
Bca_GomC07g41450.mRNA1 Alkaloid PYKS low borderline
Bca_GomC07g47090.mRNA1 Alkaloid PYKS low borderline
Bca_GomC07g62230.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g03280.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g03990.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g06040.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g47300.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g52460.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g64950.mRNA1 Alkaloid PYKS low borderline
Bca_GomC08g65000.mRNA1 Alkaloid PYKS low borderline
Bca_GomC09g03770.mRNA1 Alkaloid PYKS medium pass
Bca_GomC09g03780.mRNA1 Alkaloid PYKS medium pass
Bca_GomC09g04060.mRNA1 Alkaloid PYKS high pass
Bca_GomC09g14730.mRNA1 Alkaloid PYKS low borderline
Bca_GomC09g16290.mRNA1 Alkaloid PYKS low borderline
Bca_GomC09g18150.mRNA1 Alkaloid PYKS low borderline
Bca_GomC09g50950.mRNA1 Alkaloid PYKS high pass
Bca_GomC09g51050.mRNA1 Alkaloid PYKS high pass
Bca_GomC09g51460.mRNA1 Alkaloid PYKS medium pass
Bca_GomC09g51470.mRNA1 Alkaloid PYKS low borderline
Bca_GomC09g60660.mRNA1 Alkaloid PYKS low borderline
Bca_GomC09g61020.mRNA1 Alkaloid PYKS low borderline